18. Wang, Kui and Hu, Gang and Basu, Sushmita and Kurgan, Lukasz flDPnn3: Fast and accurate prediction of intrinsic disorder in protein sequences Journal of Molecular Biology 169629 2026
17. Csepi, Ma'te' and Berta, Blanka and Basu, Sushmita and Kurgan, Lukasz and Hegedu''s, Tama's pLMMoRF: A Web Server That Accurately Predicts Membrane-interacting Molecular Recognition Features by Employing a Protein Language Model Journal of Molecular Biology 437 169236 2025
16. Zhang, Jian and Basu, Sushmita and Zhang, Fuhao and Kurgan, Lukasz MERIT: accurate prediction of multi ligand-binding residues with hybrid deep transformer network, evolutionary couplings and transfer learning Journal of Molecular Biology 437 168872 2025
15. Basu, Sushmita and Yu, Jing and Kihara, Daisuke and Kurgan, Lukasz Twenty years of advances in prediction of nucleic acid-binding residues in protein sequences Briefings in Bioinformatics 26 bbaf016 2025
14. Basu, Sushmita and Yang, Yuedong and Kurgan, Lukasz Prediction of nucleic acid binding residues in protein sequences: Recent advances and future prospects Current Opinion in Structural Biology 94 103085 2025
13. Basu, Sushmita and Kurgan, Lukasz Comparative assessment of binding residue predictions in intrinsically disordered regions Protein Science 34 e70298 2025
12. Basu, Sushmita and Zhao, Bi and Bir'o, B'alint and Faraggi, Eshel and Gsponer, J"org and Hu, Gang and Kloczkowski, Andrzej and Malhis, Nawar and Mirdita, Milot and S"oding, Johannes and others DescribePROT in 2023: more, higher-quality and experimental annotations and improved data download options Nucleic Acids Research 52 D426--D433 2024
11. Zhang, Jian and Basu, Sushmita and Kurgan, Lukasz HybridDBRpred: improved sequence-based prediction of DNA-binding amino acids using annotations from structured complexes and disordered proteins Nucleic Acids Research 52 e10--e10 2024
10. Basu, Sushmita and Kurgan, Lukasz Taxonomy-specific assessment of intrinsic disorder predictions at residue and region levels in higher eukaryotes, protists, archaea, bacteria and viruses Computational and Structural Biotechnology Journal 23 1968--1977 2024
9. Wang, Kui and Hu, Gang and Basu, Sushmita and Kurgan, Lukasz flDPnn2: accurate and fast predictor of intrinsic disorder in proteins Journal of Molecular Biology 436 168605 2024
8. Bera, Sourabh and Basu, Sushmita and Jana, Biman and Dastidar, Parthasarathi Real-time Observation of Macroscopic Helical Morphologies under Optical Microscope: A Curious Case of $\pi$--$\pi$ Stacking Driven Molecular Self-assembly of an Organic Gelator Devoid of Hydrogen Bonding Angewandte Chemie International Edition 62 e202216447 2023
7. Wu, Zhonghua and Basu, Sushmita and Wu, Xuantai and Kurgan, Lukasz qNABpredict: Quick, accurate, and taxonomy-aware sequence-based prediction of content of nucleic acid binding amino acids Protein Science 32 e4544 2023
6. Basu, Sushmita and Kihara, Daisuke and Kurgan, Lukasz Computational prediction of disordered binding regions Computational and Structural Biotechnology Journal 21 1487--1497 2023
5. Basu, Sushmita and Gsponer, J"org and Kurgan, Lukasz DEPICTER2: a comprehensive webserver for intrinsic disorder and disorder function prediction Nucleic Acids Research 51 W141--W147 2023
4. Basu, Sushmita and Hegedu''s, Tam'as and Kurgan, Lukasz CoMemMoRFPred: sequence-based prediction of MemMoRFs by combining predictors of intrinsic disorder, MoRFs and disordered lipid-binding regions Journal of Molecular Biology 435 168272 2023
3. Basu, Sushmita and Bahadur, Ranjit Prasad Conservation and coevolution determine evolvability of different classes of disordered residues in human intrinsically disordered proteins Proteins: Structure, Function, and Bioinformatics 90 632--644 2022
2. Basu, Sushmita and Rajendra, KC and Alagar, Suresh and Bahadur, Ranjit Prasad Impaired nuclear transport induced by juvenile ALS causing P525L mutation in NLS domain of FUS: A molecular mechanistic study Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1870 140766 2022
1. Basu, Sushmita and Alagar, Suresh and Bahadur, Ranjit Prasad Unusual RNA binding of FUS RRM studied by molecular dynamics simulation and enhanced sampling method Biophysical Journal 120 1765--1776 2021